NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100012

Scaffold Water_100012


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100012 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44770
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (42.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047767Metagenome / Metatranscriptome149N
F056968Metagenome137N
F077252Metagenome117N
F077932Metagenome117N
F090340Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Water_10001221F047767N/AMNSLVTNLYPRPNGTIAGENLSCATTGSGVQLAALDEDTKYVMIDVQDNNVIVTFDGTAPTASNGHLLLKEKGLITLSALSAKAAKFLGSGGAAIVHASQFV*
Water_10001234F056968N/AMNNNPDLVHKCLDTITPSWKCVLVATVTEDGFEYDVFNKMDDEHFAENLAVLLALVSKKSLQELEKIDWTNN*
Water_10001248F090340N/AMKYNTEKIRALGIDPSDLRTSLYCHWEMEKLDYHLDRMVSYLIENRLPQALCRIVIDEIEQAKDELRKIFDYLYKKEGRLDK*
Water_10001256F077932N/AMIQEDFKELALQVKEMLSSDSGYVKESVAPMIGGGFTGDLMPVGYHVFPARQVCRTELGKTLMDEVTMFHQKVIDIDDDNTVIVYAESSLLPNETIRILEIWMQRFLEETMYEL*
Water_10001257F077252AGGAGMKKLTVSEVSEATEFLIMAQNHQSQIDLISVKITRLLGGVENDFIHELVDQAVLNKESIEWVVEEVQSWEKYSQELKL*
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