NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100032

Scaffold Water_100032


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100032 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32936
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (79.59%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001991Metagenome / Metatranscriptome607Y
F058557Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Water_10003227F001991GAGGMAVFNKNTLTQVSGFDNPIIAGELVYNQKTFWNLTMQASDGTPINLTGATIDASIIRRQLSNIQDTRYGLTFDIADYTISTPSAIALTISNRVDATGKFTLNIDDSTWSLIATDTQLDISALNPAGFSGRIKISFPASGSTPAQDSIVFLLFLVRSDGVTN*
Water_10003240F058557AGGAMAIARFENVDVNTLTFAVDSYGSGNTVITKKFTSRPLVSSVKNSVAILEKYRIYSDLIQFKFNFTPFMQDVVYNQNLYSFTWNGQDWRVTDAIESNDRMSVTVMCYRSDPATKV*
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