Scaffold Water

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100035 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002930 Open in IMG/M

Scaffold ID

Water_100035 Open in IMG/M

Source Dataset Name

Estuary water microbial communities from Pearl Estuary, Zhujiang, China

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30588
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (56.86%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

30588

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (56.86%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Pearl Estuary, Zhujiang, China

Coordinates

Lat. (^o)

22.67

Long. (^o)

113.71

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002390	Metagenome	565	Y
F005026	Metagenome / Metatranscriptome	414	Y
F008026	Metagenome	340	Y
F015100	Metagenome / Metatranscriptome	257	N
F018706	Metagenome	233	Y
F022418	Metagenome / Metatranscriptome	214	Y
F026871	Metagenome	196	N
F072846	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10003512	F022418	N/A	MALTLDLNLSVARTTTSSGVPGPNLVLLTQAGAFMQTEDGKFLEFEF*
Water_10003517	F026871	AGG	MEITHYMFAGLGVALSILAFFIKRNKWEIDDMKDRLRQVEISAAGQIKDIDHLTKVCEDRREDIKKIFEKMEAK*
Water_10003518	F005026	GGAGG	MFELLTLFLTGGGSAAMGSILKGVFGAITDARSQKHEMEMARECRNNEFAMQFQASLNSGASGAFTRATRRMLALIGMFTLSFITCITTIYPSVPLVSTTNITGEGRKEFLFGLLSFPAEQAPLVVTTGHIALFEATVVLPLIIGFYFTPGGRR*
Water_10003519	F018706	AGGAGG	MMLDRVSVAGMSGTVATFGLSTIDTFLGIAVGAVTLVYMCIKLYQEIKKK*
Water_10003530	F008026	AGGTGG	MGRNQGEKKYLITSKKALKLLGFKSQTSLDQFHADEGLTCYIIDGMACRGGRGFAWDKREINKWMKTEGRSSDEWLID*
Water_10003532	F015100	GGA	MPISDGKGRKNNAVREETNPFIEHTSGYESVGASQREERNAEGGDDRHRVRIISKRVRICDPDNLVGGVKYLVDSLRAADIIPEDDPQAITLEVSQEKVKTYKEEETWVEVTKQ*
Water_10003537	F072846	GGAG	MRIAAHKQAPKLTSFEVFAYKQIKGQRACMKVLEVEARTAQDAGKTGQSFSKMMSYEYSHVREVR*
Water_10003543	F002390	AGGAG	MTHHATKLFPIALQELIEIGEKSRKQREQRERAKRGALPRETGACKHVACKEKQLKLELQTRI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Water_100035

Overview

Ecosystem & Geography

Associated Families

Sequences