NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100160

Scaffold Water_100160


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100160 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16106
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002322Metagenome / Metatranscriptome571Y
F002542Metagenome / Metatranscriptome550Y
F018181Metagenome / Metatranscriptome236N
F037238Metagenome / Metatranscriptome168N

Sequences

Protein IDFamilyRBSSequence
Water_10016018F002322GGAGMIAALPYSKLVEKHILECIQGGIGIRQMIASMQHLQDAPKSLSTMYKIYGSFIEMERAKINGAVGKRVIDQALDGDFKSQELFLRSKGGWSPTQTNIEVEQETDPDLDESAVDTLMSLLGYNENGPEEETTCTCGEEDNCRCS*
Water_1001606F018181AGGAGMKQSIKINSSFYKKMEILDEYVEEYVSDQLIDIAQTAVNLSPVDTGAYVTSFSYSVGAGRPRGKSSDNRPKKQNPQAMRQEGLSNLMGDINKVDLKNTTSITLRNASPHADDVENGGPSWRRAGYKVFAQIRDIYG*
Water_1001607F037238AGGAGMSFRSFDLLNLVRDFGETLTLRKVTTAGTYNPATGTVDSSVTTDYSVKGYLYNYNVGVAGGNDEVVRGTRKCVISALDLAAIPDFDDLIIGSGDTVKITSVMSLFSAGTAIGYICDVGE*
Water_1001609F002542GGAGMHPTYLGWQVDWPVFIKMPLLADNTNWKRGDHFNWAERGINQDKVATLYASGYIHHNKELEVQNKVGDRLSELAGKDLETLVNLLNVEVNKRTSSKTEFESKKCKKSKIDDKQRGLIRRFLNVNRWITEDFYDIRDKVLAD*
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