NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100441

Scaffold Water_100441


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100441 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8797
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009493Metagenome317N
F030253Metagenome186Y
F047926Metagenome / Metatranscriptome149N
F084220Metagenome / Metatranscriptome112N
F094426Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Water_10044112F047926N/AMYIEIAKNTWAYAKDEQDAERIRAKYKDYKKKQGDLISRHFIVNYIEETNFIK*
Water_1004413F094426N/AMYLTNYTADRVKLAYTFAEHLRHNWRVLSDGKRDALLKEIAELTNVQFIEQQYESRIDKIQSDGTYDKALRRAELGL*
Water_1004416F030253N/AVKNSVSNYLRKRRHLRHVNKYLASVRWEIINTVIAASATEYNEKVTKHLENLGGLIRKYERRRRWLKF*
Water_1004418F084220N/AMDYLSRELEDYQYYIDTTCEKCGECTDPDYYDCRCEDEDEEEEE*
Water_1004419F009493N/AMKMKKRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALETIKEQLGYNTGAPYNSFRVTAYVRYRYDLDNSIIAVKFTSDALKTLGWIKDDSPKYFRRLLMVWKEQIPKDKAQITIELSDENPE*
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