Scaffold Water

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100547 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002930 Open in IMG/M

Scaffold ID

Water_100547 Open in IMG/M

Source Dataset Name

Estuary water microbial communities from Pearl Estuary, Zhujiang, China

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7756
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (34.78%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

7756

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (34.78%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Pearl Estuary, Zhujiang, China

Coordinates

Lat. (^o)

22.67

Long. (^o)

113.71

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009330	Metagenome / Metatranscriptome	319	N
F009856	Metagenome / Metatranscriptome	312	Y
F015079	Metagenome	257	Y
F024541	Metagenome / Metatranscriptome	205	N
F036970	Metagenome / Metatranscriptome	169	Y
F042877	Metagenome / Metatranscriptome	157	Y
F048232	Metagenome	148	N
F063610	Metagenome / Metatranscriptome	129	Y
F063638	Metagenome / Metatranscriptome	129	N
F063642	Metagenome	129	N
F091789	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1005471	F063638	GAG	MLDTLDTLTAVIDTVTTVVVLDPVIIDPMEPWYVTHYVELIFIALAATKAVLNLVPSEKPRVLFGYLDTLIGLIFKDRRK*
Water_10054710	F036970	N/A	MRIFCNYPNGGLIFVKSKHYKMTKYKRWFTSVNRAIVAEMAMQKKTQKDLAEVLQIHPVTINRKLKDPGTFFLSELGQICETLNIDLKNPPNYGTSAN*
Water_10054711	F015079	N/A	MVQAQIESIQGKGDWKGRHGTMYTFEVGFNDGTIGEANSKSQEPPYKVGDEVYYEIKSDDQYGKKLKVSKNPPPPGGFQQFQPAKQDPDKDKKIIRGMCFKVAGMAWANQYKHKQFDLPHAVMVKGVIALAKEYEQAFNEWMEE*
Water_10054712	F048232	GGA	MLNAETLPYEERVSRIMFLREHRRNLLRAYCEDDVTKREKDKLRQEIARVQKALKKLDPDGMFPP*
Water_10054713	F009856	N/A	MKYWFEVEDAQRWGLSAAAVLAHLKYWIARNTDAGEEPCMTQSIAKMQGHLPFLTFDQIRRALSKLEKGDVIYRKANGFDRRHTYCLAELPHARGENATTKRQDCHIEESKLPRVHIETNTSKRTRENAREELEYQRPTEEEVIEYFRDIGGTDVADQLGQEFHTHYESTGWIVSGTPMAKWKPKARSWLSRMRNKQSNERRKGFNPAGFTPDGLKDFIDNG*
Water_10054715	F042877	N/A	MIQGILVAIAILTFAQVGAEYYQEHQVRLFNLVVLLLSCLALFV*
Water_10054717	F009330	GGA	VTLDGYLSRNYDDLLQAAYRIAGKDGPDLLHEVILQLYQTKQDTIDGLLERDQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFARHIVDWWDGDGVAAHRDELLTHIEERLADLPWFDAEVFAIYFEEGHTLDSFAEATGISRHKLYTTIRRVRKEIQGARRPDREADEGDGNR*
Water_10054720	F063610	AGAAGG	MKRFAKLYTKIHEREGKRWEATTWDCTPPGHHEEYTLSQTEWKLLEDMPKKQMQLF*
Water_1005474	F024541	N/A	MEFFDMIISQYGSVHRCAKKLGTNREQLLRQIRTGNDQVLDAIADNCRLSRQEVRWEFRYHNEHRESKV*
Water_1005477	F091789	N/A	MISVHPYQCKTWSEAKHEWGWLMRSRGLQQMNRKAPTGYGEAPDLLKGKVEGPGFVIYATGYDPRKPNHHITARASIYGSRYCGHLNPF*
Water_1005479	F063642	N/A	MEYTATQLFDEVIQLATPDCVKRRDMTLVRKLKDLQNYTQRLEKIAEDALDILKETK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Water_100547

Overview

Ecosystem & Geography

Associated Families

Sequences