NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_101113

Scaffold Water_101113


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_101113 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5193
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001407Metagenome / Metatranscriptome702Y
F001660Metagenome / Metatranscriptome655Y
F024674Metagenome205N

Sequences

Protein IDFamilyRBSSequence
Water_10111310F024674GAGGMSIYDTVDEELMELELNDKVFRVDPLKKISDEKSRVDRFNKKYLIELKARKYSIDKIKLWGGAMIERDKYRALMNGCGDKIPAYINKFPCGSYYGWNLKKIKEPSWYEEDLPKSTVESKGKRPKIVGDLQFEDGKKLI*
Water_10111312F001407AGGAGGMSIIRIDQKRLDNIAKAYWNTSGEMREMWGRKWYELVKQIGRKLDETKRSTTDTRPIH*
Water_1011136F001660AGGAMADPAKYKSLSVNKADWEQLGTLATKTNRTRSKMIGRLIRFFLDNKGGKSNGKANKGS*
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