NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_101806

Scaffold Water_101806


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_101806 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3867
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000706Metagenome / Metatranscriptome926Y
F017479Metagenome / Metatranscriptome240Y
F034923Metagenome173N
F063695Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Water_1018063F034923GGCGGMTNNDKLLIICLIGAGISFIVWALQSYKEAYDRGHRDGWHKGRAVNRADFWQE*
Water_1018064F063695AGGCGGMKITAKDFDNLTDTVMGWKGNDWELQADRFSDKPAFDWLVVCWYDTVIAMIMARSFLEQNHHAFQESYDHNMESWILLTNYDSFNMAVSA*
Water_1018068F000706GGAMTQSDFFTLYLGTLAIIGGLSGYVITHLLSEIKRLNSRVDEIYNILLDR*
Water_1018069F017479AGGAGMNELKTAAGSWARAFLVAVISMAAAGVTDPKALIAAGIASILPPVLRYLNVNDPAMGIKK
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