NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_102740

Scaffold Water_102740


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_102740 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2981
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033250Metagenome178N
F045425Metagenome153N
F070658Metagenome123N
F080627Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Water_1027402F033250GGAGGMSTSPRCASSPPSSRPVGTIDLEVLRPVLEQHAASMVEDARTGWPVDTGICREAWEAEIDVSPSQLFVSLINEARQRGRGYAVYIHRARSPRLVYTEVEERFTLNLIPALQADIALTLAESMRG*
Water_1027403F070658GAGMSVDLDIELRSVTRHLKRSHGEVRVLTAGEFMVLLAGSQDILLQLRQGWPVVTGRSRAGWSVEPIQRPFLGYRVSNGIDYSQYVHRSGEGPDPLWQEQMLIIRDRILPPIVERLNRTITETERYSQPAQEQQPQRSLFLAKPQQQTVDLFSQVRRLRRLVRRR*
Water_1027404F080627GGAVTYATALTAAIARLVAAGLVECRSPNGLLGAGAPRGHRSVACLPAGDRKQRSREAARVDGLRVTARFTVQLGHELKPGAGLAAPSQALQDLHSAQRYLIQPGTSLTTEGALTFGPVTTTRLQGGAYMIQAFELGVTFNLDMSAP*
Water_1027405F045425N/AVELNGSAPTVSAVTFSLWDSSGTVLVDAGSASESGGLLSFTVTASVTTGQSLGQGYLLKFSATIGGDRHDFYNEAALCLSRLYPPVGTTDLTNRYSRLAALQTTGASDLQKFITDAWTELTSRLFSEGLPFWRMRTPSALRPWLTAQALVFALDDLALTLGDGGPYRDEARRIEQTLPRLYGQIRSRMDTDEDNTVSEEQQAASPVIILSSGRMGRYTR*
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