Scaffold Water_104009

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Water_104009

Scaffold Water_104009

Overview

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_104009 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2349
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)		Depth (m)	6
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008696	Metagenome / Metatranscriptome	329	Y
F030293	Metagenome / Metatranscriptome	186	N
F103165	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1040092	F008696	GAGG	MNNWHSDTIKRFSRLDSEALLYIREDSYEAAKVGETIDNPKTGQYWDEFHYASQELRRRKVTAIGKGFL*
Water_1040093	F103165	AGGAG	MTTFYMCQITGKYFEDTLVAKTAVRVADYPSEPSWGIYKTYDGAAILFDCDVDHAKGELNDDS*
Water_1040094	F030293	GGAG	MIVEMLDDRVSIEALGLIPHFFERALYIEGQSIQSVADKMDDLYHYGGFVYPFEGTIDDKGTYLSSSDEDDPLQPIARIDKLGFTIWVYPYAIVGLTDDKGNQKVARFD*

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