NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold G310J44882_10000206

Scaffold G310J44882_10000206


Overview

Basic Information
Taxon OID3300002933 Open in IMG/M
Scaffold IDG310J44882_10000206 Open in IMG/M
Source Dataset NameCombined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)29789
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (80.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016247Metagenome248Y
F048757Metagenome147N
F051683Metagenome143Y
F055446Metagenome138Y
F058718Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
G310J44882_1000020615F055446GAGGMIKKKKKYNYYKLDVGFFPDIVKLCFDDNVFQQILKDHEITLKANALDCGIAETHLIGDGKDAIIILVFNMALVNDNLGELVDTITHEVSHAVDHLAEHIGEEDNFVNETRAYLSGHLAGQIFKICIHEKEKYAGKASRKLSKQASKRSGRSELQVDQLGERSLRSDSTDKPEVLLRGTEDNDRKDITKADDSFFSNERTGF*
G310J44882_1000020621F016247AGGAMNFIVEHKYKGKYVMETITGVEDLDTSIYQDLLGIWVCDSMEETLIMEKQLQEMRSARSSQSS*
G310J44882_1000020623F051683AGGAGMKIEIDDDFADEIVRATLAESYVSVSGMLKNPDAWHEDDVAAWKELLPAIKTVGSWFSVNFETEIKKAKKKK*
G310J44882_1000020628F048757GGAGVNLKQLLKSAGISNNIIKEVERKSKMTTAMQEVEHQEKAAAMAKMMLNDVMPHLHGALNKTPPSKPKKTIIIPD*
G310J44882_1000020634F058718AGGAGMQVACYGSEFDIPDLLIDTYIKDFNALPGSGYREGVCQIRESIEEILDIIAEEPDLLHEKDYHHDFIKALAMKQALGELGILYDA*
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