NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold G310J44882_10000348

Scaffold G310J44882_10000348


Overview

Basic Information
Taxon OID3300002933 Open in IMG/M
Scaffold IDG310J44882_10000348 Open in IMG/M
Source Dataset NameCombined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)23017
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (77.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008072Metagenome / Metatranscriptome339Y
F009735Metagenome / Metatranscriptome313Y
F017814Metagenome / Metatranscriptome238Y
F020318Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
G310J44882_1000034810F017814AGGAMSQNNFDFNQFNIMTERKPAGLQIFLAQQLLSNALWSMEKYGNPHTDELTDALNAIKIIRATMKAEAAQRAVGTATL*
G310J44882_1000034824F009735AGGAGVLIGLILKKSNMTMMTGIVESVSTKDVNTKFGLKPTFSMKVNGTWVKCGFKDPGVSVGNQVEFDGVTGTYGVETKKVIVLSKGTTAPAAASPASTPTPVVGKTFSGGGYKEKVFPIPPLHGDRAIVRQNALARATDIYIAARGGKPFELELSTLDLVIQFARKFEAYTAGDLDLESATNEVANEVESDISTLF*
G310J44882_100003485F020318AGGAGLEVVTKENFEEWKFHPVTSRLMRLLSEDREAMKEGLVNHSYEDEAEVKGRCRAIAIILNLEYEDLFEAKVATNEQ*
G310J44882_100003488F008072GGAVRRKTSRDSRYKKSVWTQNQKLQAVSTYLMLGSMTETALVTGVPLPTLKLWKQQEWFKEYCLQLQAEDVQQMDSNLKRVVDKALKTVEDRLDLGDAQFDQKTGEIVRVPVKAHVALKITTDLMSKQEKIREAPLKEELEKTIDDRLLKLSEEFARFASQKPIDVVAKEITNG*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.