NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold G310J44882_10000406

Scaffold G310J44882_10000406


Overview

Basic Information
Taxon OID3300002933 Open in IMG/M
Scaffold IDG310J44882_10000406 Open in IMG/M
Source Dataset NameCombined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)21403
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (82.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013252Metagenome273Y
F018653Metagenome234Y
F085169Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
G310J44882_1000040627F013252AGGAMADDLLGFRKSYKMTGTPGYAGGPGEKTIDAGASGSKRSNNAVLNGNKMAKSSKVGPDKNLKDIKGGNFY*
G310J44882_100004066F018653GAGGMSQYKYILIDEFGGACRQFVSKLEATPYLTAGMSLKALPRQPKVSPYQLATTLLKEAPF*
G310J44882_100004068F085169GGAGGMNNLIDEYGIINQRIAELEEIKHKLKAEILSRGVGIYEGLSWFAEVQEYDRENISAPLVRKLSNEDFVKQVTTIQHIKAVVVKPLEA*
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