NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold G310J44882_10000631

Scaffold G310J44882_10000631


Overview

Basic Information
Taxon OID3300002933 Open in IMG/M
Scaffold IDG310J44882_10000631 Open in IMG/M
Source Dataset NameCombined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)16992
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (67.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011648Metagenome / Metatranscriptome288Y
F017467Metagenome240Y
F023062Metagenome211Y
F065407Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
G310J44882_1000063110F023062N/AMIMSFEIDPVKYGVLWNKVETYEAKFDELSKKIDKMETSIESLVAMANQSRGALWVGIGLVSTFSAFVGFVINWLHNK*
G310J44882_1000063122F011648AGGAGMSEQDQDFNNFQQHLERIFKDIEDGVFLSADEIGDLRYACGLPARNTHVNPVLRDVINDFGNVFGLQNFPTIRGKK*
G310J44882_1000063127F017467N/ALKHEEYLVSWYIAVAKKRGWPEVVRLLAQNKETEDRMKMLIKKRLGK*
G310J44882_1000063132F065407AGGAGMFTFDEQFKKYEEVLDRTKQAYEFWYNCLVSTWKDFYKTYK*
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