NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold G310J44882_10004929

Scaffold G310J44882_10004929


Overview

Basic Information
Taxon OID3300002933 Open in IMG/M
Scaffold IDG310J44882_10004929 Open in IMG/M
Source Dataset NameCombined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4696
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035607Metagenome / Metatranscriptome171Y
F048062Metagenome / Metatranscriptome148Y
F094805Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
G310J44882_100049291F048062GGAMSPSFTTNVLEPEEVNGEDAGYVPFYNDGAETGIVPGDEPHKQEVWPYDGTNPALVPYQQGIVAAVQESRERIYDSLIVVDRLEKMGMVNPDDRAKHLAKFEQMDSAKLAGFVASLDMLEESGARQPRSQKVASGSNRLPEMGRLTTASTVKRQDISSDDWLMTL*
G310J44882_100049294F035607AGGAGMAKTVSRSGDNGESTPVPVIDLGGHIEDHKADPADLSAARVATVTPTSFKGMKDIKTGDWIENLMDSSTVFSSPKGSFKLAAAGIHGSIQPIQEEIRQDAFVLRAVQRGRIKFLTEDEAMDKIADLRDESDTSESHIDRLRESLGAGASENNGMYKIPLPDEAEPKGKAQSFEEIWASSTSTPKSKNV*
G310J44882_100049295F094805AGGAGMSDDFKTTAEPVGIILPSGTAISGTTWSNQAWFNVWAPQTFAGTVVSGSAQPTLSGNGWQGQNNVGYVFQTDQYNSMREGSGR*
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Institute for Fundamental Biomedical Research
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