NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold G310J44882_10005680

Scaffold G310J44882_10005680


Overview

Basic Information
Taxon OID3300002933 Open in IMG/M
Scaffold IDG310J44882_10005680 Open in IMG/M
Source Dataset NameCombined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4246
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015302Metagenome255Y
F023777Metagenome / Metatranscriptome208Y
F034448Metagenome174Y
F104347Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
G310J44882_1000568012F034448N/AMHVNTWTLPRPPEEALNQCHAVYINDPVFRMWAMKKWCREQNLSLIWSELVDTTDVSAFFDEACAFYFIDPADALMFRLRFI*
G310J44882_1000568013F015302N/ASKDEYYADTAARLDTIIGGDTQHFLRLQRVKNEYDELARAVPVGQGFLTFDDYVREYYGVKLQFDGDNVTLAYSIVDEKKHLMFILKFNR*
G310J44882_100056802F104347AGGAMNSFKQWYLMNQKEITWFLIGFMVFAGLQDLSVGNYVGAAISFGLAYINYKLN*
G310J44882_100056807F023777AGAAGMAVKSWFLSVVDTATHKPVIHKMFFTAPEMNKFIKEQKIVEEYKKPQYYIVKENY*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.