NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26062J44793_1014818

Scaffold JGI26062J44793_1014818


Overview

Basic Information
Taxon OID3300002955 Open in IMG/M
Scaffold IDJGI26062J44793_1014818 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)932
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-37.9951Long. (o)-44.9972Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012353Metagenome / Metatranscriptome281N
F034958Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
JGI26062J44793_10148182F012353N/AMTLYTSGDWKVDPNKDVTFPLVDWIVKLFPVIKDKEIEINQVDLDGEFAMGFCQDNDGEFLIHVHNGLDIKEYVKTLIHEFTHVRQTVDGITDANAREDEAYYLEEQLSKAFWDNNISGTQDVDL*
JGI26062J44793_10148183F034958AGGAMKKSKVDQMIDNLEVCIDFLGLNDEQTGEVLAATNELGVNVEYFCHEFMETSSATVHDNDYLNIALFNAMYWEW*

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