Basic Information | |
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Taxon OID | 3300002961 Open in IMG/M |
Scaffold ID | JGI11641J44799_10102322 Open in IMG/M |
Source Dataset Name | Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 805 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta |
Source Dataset Sampling Location | ||||||||
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Location Name | Twitchell Island in the Sacramento/San Joaquin Delta, CA | |||||||
Coordinates | Lat. (o) | 38.107057 | Long. (o) | -121.647578 | Alt. (m) | Depth (m) | 0 to .12 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F101438 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
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JGI11641J44799_101023221 | F101438 | AGG | MLRLMFSACLFVCSAASAWAGSPVDAPVSQATRFERLLDLRNNVSLVRYPQQALDXADAMSDPEFLVAAMMMSANPEIWLKAMERAGAPGVPQNLSQMATPEMLADWFYSSIDPQFQQAILTRMLDPKKPQRWMQAMSNPRFYMHALAIMNPSTPMQWMTVTADGRMIQPMQAWFDPKTYLNWMRLPMPASSDTQKSGDKP |
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