Scaffold Ga0052187_10045

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0052187_10045

Scaffold Ga0052187_10045

Overview

Basic Information
Taxon OID	3300003086 Open in IMG/M
Scaffold ID	Ga0052187_10045 Open in IMG/M
Source Dataset Name	Marine viral communities from deep ocean hydrothermal plumes from the Lau and Guaymas Basin
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	86515
Total Scaffold Genes	146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	122 (83.56%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location
Location Name	Lau and Guaymas Basin
Coordinates	Lat. (^o)	-20.053234	Long. (^o)	-176.133763	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014191	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052187_1004590	F014191	N/A	MDLTFITAELLNDISWFDGIAYTVLGLVVYAVAKYINTKIN*

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