NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0051076_101174

Scaffold Ga0051076_101174


Overview

Basic Information
Taxon OID3300003091 Open in IMG/M
Scaffold IDGa0051076_101174 Open in IMG/M
Source Dataset NameHot spring microbial communities from Five Geothermal Springs in Yellowstone National Park, USA - Norris Geyser Basin, Beowulf Spring
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1481
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Five Geothermal Springs In Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameNorris Geyser Basin, Beowulf Spring, Yellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.711361Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026309Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0051076_1011742F026309AGGAGGMSLPAPLSNPNLFIGLVVFIVASILLYLERIPLSAWTTIVGVLLGYYFGYQHALLKERRTSE*

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