NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0052239_100828

Scaffold Ga0052239_100828


Overview

Basic Information
Taxon OID3300003099 Open in IMG/M
Scaffold IDGa0052239_100828 Open in IMG/M
Source Dataset NameFresh water viral communities from Lake Needwood, Maryland, USA - June 2007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)669
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Fresh Water → Fresh Water Viral Communities From Lake Needwood, Md

Source Dataset Sampling Location
Location NameLake Needwood, Maryland, USA
CoordinatesLat. (o)39.121Long. (o)-77.129Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005585Metagenome / Metatranscriptome395Y
F056187Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0052239_1008281F005585N/AMAIRDTVYYAFTKSRDNSVFSSETQLTLHSFLSRQNSAEWWKVQSARIRISISLDTPLSWLSPDFRHQKLGMTLSLTRNSNNHQWCDYCKSRWGQLKDGTWHLKAQVPAVWKVVSETPNRRGQVRFYCQSCANEAQNWPDGTFWSLKEQLTYAIDQFAGREKLDVELP*
Ga0052239_1008282F056187GGAGMSNYLDDYVSVQDRLKEFIGDHPDYRIKTHVLEESLTPNCDVYIVKTELYRTE
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Institute for Fundamental Biomedical Research
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