NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0052239_101470

Scaffold Ga0052239_101470


Overview

Basic Information
Taxon OID3300003099 Open in IMG/M
Scaffold IDGa0052239_101470 Open in IMG/M
Source Dataset NameFresh water viral communities from Lake Needwood, Maryland, USA - June 2007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)515
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Fresh Water → Fresh Water Viral Communities From Lake Needwood, Md

Source Dataset Sampling Location
Location NameLake Needwood, Maryland, USA
CoordinatesLat. (o)39.121Long. (o)-77.129Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011387Metagenome / Metatranscriptome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0052239_1014701F011387N/AMAAKAITAKDYFTNLVEYTGTALTAVDDWMEVPAQSPSYTFAVTVTGGANFQLALECSFNGNGNWFTIDNGKTINSNGQYVYFYDGKPAAKIRVRISSISSGTPSVVPHIAVAYHG*
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