Scaffold Ga0051080_1009721

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0051080_1009721

Scaffold Ga0051080_1009721

Overview

Basic Information
Taxon OID	3300003146 Open in IMG/M
Scaffold ID	Ga0051080_1009721 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins - TS28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	848
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Huma Fecal → Human Fecal Microbial Communities From Washington University At St. Louis, Missouri, Usa, Of Twins

Source Dataset Sampling Location
Location Name	Washington University at St. Louis, Missouri, USA
Coordinates	Lat. (^o)	38.63549	Long. (^o)	-90.264891	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067845	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0051080_10097211	F067845	AGGAG	MKHWKNLLVCLLAGVLALGCSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNHFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR*

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