NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0051080_1014429

Scaffold Ga0051080_1014429


Overview

Basic Information
Taxon OID3300003146 Open in IMG/M
Scaffold IDGa0051080_1014429 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins - TS28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterWashington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2505
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Huma Fecal → Human Fecal Microbial Communities From Washington University At St. Louis, Missouri, Usa, Of Twins

Source Dataset Sampling Location
Location NameWashington University at St. Louis, Missouri, USA
CoordinatesLat. (o)38.63549Long. (o)-90.264891Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062845Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0051080_10144293F062845AGGGGGMEKTPFIVHEKFRSDNNEQRKEHFQKKFERYIVDELSNTVPSKSCA*

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