Basic Information | |
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Taxon OID | 3300003161 Open in IMG/M |
Scaffold ID | Ga0006765J45826_115478 Open in IMG/M |
Source Dataset Name | Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_8 (Metagenome Metatranscriptome, Counting Only) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1316 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Hopland, California, USA | |||||||
Coordinates | Lat. (o) | 38.97364 | Long. (o) | -123.117453 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F028190 | Metagenome / Metatranscriptome | 192 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0006765J45826_1154782 | F028190 | GGAGG | MAAITVKKADAVTNIVYDALAASGGDNSPAAWRQDTGAPAGLPVGLRNSFSLVSKWNGPKTARQLSFTFVLPYAVQDSTTTLYSAKDRVVLTGIVTMPVAIPSANLNEVAQGLNLLAATLVAQSVQAGYAPT* |
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