NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26064J46334_1029516

Scaffold JGI26064J46334_1029516


Overview

Basic Information
Taxon OID3300003185 Open in IMG/M
Scaffold IDJGI26064J46334_1029516 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1065
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-38.0018Long. (o)-44.9985Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005670Metagenome / Metatranscriptome393Y
F018197Metagenome236Y
F068937Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
JGI26064J46334_10295161F068937GAGGMNQRANERELNANQFEQLIDKYIDTIVDSMSMEDFQQYVRDDMNDFLYKCSESEVINEIKYTLDDEMLEEFITTIKKESKD*
JGI26064J46334_10295162F018197N/AMNTKLPEQTNIKEWTNMPPISDELYNELVKEFNNERQYFFNDSYTLED*
JGI26064J46334_10295163F005670N/AMPLLSRSEYNLILRSFDKYDIYMNTKERELREQLEEKLYNNFYNPKDKVTTNLVNLPALYDIKTEKDLSL*
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