NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26079J46598_1001984

Scaffold JGI26079J46598_1001984


Overview

Basic Information
Taxon OID3300003216 Open in IMG/M
Scaffold IDJGI26079J46598_1001984 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8012
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026712Metagenome / Metatranscriptome197Y
F030556Metagenome / Metatranscriptome185Y
F035552Metagenome172N

Sequences

Protein IDFamilyRBSSequence
JGI26079J46598_100198412F035552GGAGMNIKDDLLIKADLDVLYWVLDKVADKVKEDNDFIKVLLQLEQFVEIHKTRTRDMVTYRDTIERAREEYRSLSLKYKGTSELLSETQSLLRKVMNEKMDDDVDF*
JGI26079J46598_100198418F030556N/AMANDKTFVAKTSVVSTQYGQIVKIALGPQDFEVLNNAKNEKGWVNLEMKDKRDGGKYIQLQGEYTGKAAPRAVAVNDGDDMPF*
JGI26079J46598_10019845F026712N/AMYWTVNDKEQETLMDLVIRELRIRREPMDNYNIQELAYRQAISDGAMRTDNYFNRMTR*
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