NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26339J46600_10000213

Scaffold JGI26339J46600_10000213


Overview

Basic Information
Taxon OID3300003218 Open in IMG/M
Scaffold IDJGI26339J46600_10000213 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20260
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005307Metagenome / Metatranscriptome405Y
F011616Metagenome / Metatranscriptome289Y

Sequences

Protein IDFamilyRBSSequence
JGI26339J46600_100002135F005307AGGMDRGIAVRAALKAGVLGVFIGMIPFLGIVLTGALAVFFYRRENGFALPTALGSRLGGAAGVVAFAINALLITIRIFVFHAQQEYTDTILKIAQRFGANAADPDFQASIHNLFTPSGLALTFFCGMIVTVVLASIGGALASLLLRPRNTRE*
JGI26339J46600_100002139F011616AGGVNAPVPPKPIADDKHQDKHQHRHSIYAAEASGLLLMAVLLLILTIIRYWRYIPWSAR*
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