Basic Information | |
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Taxon OID | 3300003218 Open in IMG/M |
Scaffold ID | JGI26339J46600_10003072 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5025 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000188 | Metagenome / Metatranscriptome | 1692 | Y |
F059669 | Metagenome | 133 | Y |
Protein ID | Family | RBS | Sequence |
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JGI26339J46600_100030723 | F059669 | GGAGG | VNTYYTQPPWEFLLTASRNTLQSYELSRLAHAANLRKELGALLDQYLEENTAAMLARWLMDQRERTVLGEEAVSAPANSENKGRRASDNFLGDRIVSPRASRERA* |
JGI26339J46600_100030726 | F000188 | GGAGG | MSVKPEMAFDVCWEVYRGAREVLEAKRGITALTWEVDAKYSWRPDLRPKLKDWVADFALAGQAALEGPERASRMVLFRLYYLGLTPYERARHFLGLSERSWVNWSEEIRRRCGEELLRRDLFPPRKYFGGGD* |
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