NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold soilL1_10021406

Scaffold soilL1_10021406


Overview

Basic Information
Taxon OID3300003267 Open in IMG/M
Scaffold IDsoilL1_10021406 Open in IMG/M
Source Dataset NameSugarcane bulk soil Sample L1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2244
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020438Metagenome224Y
F032399Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
soilL1_100214061F020438GAGGMKSHKPTPFCESRAGERGAALITAVLLSLLLLAAGGILILTSTMTGITARDSTAEMQAYYAAESGISKVLEVLRGNVDSNPAGTKASFHNVICSPTLWTTTTGAAANVASDGSSRFQVTSIFDPDNQVNWAVDPNANTATQCALATYKPLKLRIRVSGFGPRDSKKNMEVVVDRYTLEYDVNATVTLPNGSGAQIGFDLGGSNVTTTSGSDACGSGAPIAAFAISNQDYNTTNNVIDGCDPDGSNCNGSGPNVYPGDPAVLGNNNTPSFLKTVANTRLFLYGSEGMKQAAINQGR
soilL1_100214064F032399N/ANATGVRTISASIAGNGNSLVLGVSLLRIDGSGSSVITVTTKNGAGNRGVFVVNVTPSPGCGSAQQLTVSVSN*
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