NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold soilL1_10092233

Scaffold soilL1_10092233


Overview

Basic Information
Taxon OID3300003267 Open in IMG/M
Scaffold IDsoilL1_10092233 Open in IMG/M
Source Dataset NameSugarcane bulk soil Sample L1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1663
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F000805Metagenome / Metatranscriptome883Y
F001079Metagenome / Metatranscriptome785Y
F019580Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
soilL1_100922332F000805AGGAGGMGMPSGRSPEDARQYYHYLQAHQETMQSAATWHVRWLDLAWLWGFFAALALVALLWVWQYRTTRQRTGIYPVDSFGGYTTELAGPATFFFLVLTLILAGFAVVLIVGHLVWGQKF*
soilL1_100922333F001079AGAAGMDAAAAPSALPYVAWSTATFATIPAADWELVYGSMQALKAHVQEYPGSQKLEAFVQLVENGDVVLHCYTTWDTPEQLEAFLERGYTVERMLEQVAGISAHEMRVMEKVF*
soilL1_100922334F000280AGAAGGMADERGHRPARPLVGYRDTGEEVRHSRGALIRAWIILAALALFYLGWTLTVYFLEPGLR*
soilL1_100922335F019580AGGVYLKHITSLQFLTYLSFFAVLLAAMFRFVPGRSPPVRKEPYPEEELHAHDRKVAKYFLAGGFFLVLGSLHMAVKNLPWVADYLARTGYAGHLVRDLSNTHVMIVGGGTLLATGLTWRALPRIVGRPLASEMQKVLKQPVVVVN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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