NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10000901

Scaffold JGI25908J49247_10000901


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10000901 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9295
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F002052Metagenome / Metatranscriptome599Y
F010749Metagenome / Metatranscriptome299Y
F021758Metagenome / Metatranscriptome217Y
F034569Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_1000090112F021758AGGMKVIKLDRRYNGYGTWTHRTDGGQWYGEEAHARGLVTFYDMRCYMTQMNGPGCFIYEAGALKKAGRTVPDWGWDVNGNVYFRDSALVNFTLAKDRWL*
JGI25908J49247_1000090113F002052AGGAMRTFQYTFTVTCAGNGTADTAQVEALIDLSMQDLVYDDEFITAXDEKESVTIQVQRIG*
JGI25908J49247_1000090118F034569N/AMNKTNELIQWAGTAFILAMYVISNFFPGLDDLRNSVALVGAACFFAWSYRVANRQQMIINGVAIVLCVVGLLRAXG*
JGI25908J49247_1000090120F000354AGGAGMTKVNYDRFASFDLNEACDHFDSEKQSNWKXIGKFIVADGQEYSSILLKEFDFDXVVDNEYEAFAAGVKYALTKMNIAFEAAALDLQVCEVDLVESMGFMLVRCDDEPEDFVKRVLKKPVVMVESWLD*
JGI25908J49247_100009016F010749N/AMKAFTFWRNAIISEIYVVECDTEEQAREMLQSGEVEVFNEEWMDWASDDFHLEHIEIIDPLYKMVKEYKEPA*
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