Basic Information | |
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Taxon OID | 3300003277 Open in IMG/M |
Scaffold ID | JGI25908J49247_10001123 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8460 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (84.21%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000368 | Metagenome / Metatranscriptome | 1223 | Y |
F001515 | Metagenome / Metatranscriptome | 679 | Y |
F001531 | Metagenome / Metatranscriptome | 676 | Y |
F057906 | Metagenome / Metatranscriptome | 135 | N |
Protein ID | Family | RBS | Sequence |
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JGI25908J49247_1000112318 | F000368 | AGG | MEALKQVALTWFRAAASAAIALYLAGETNFKTLGMAALAGFLGPVLKWLDPSAKEFGRGAE* |
JGI25908J49247_100011236 | F057906 | GGAGG | MITYNLNTEDVSNLIKAHLCDDLKITNIFDYAIISSVSDKLYGMVRAYPEGKIVITKDDADKILTQAKDLESTPLFISVTSDGVFQYDLSLSKLKFENYVDHSAGIDTDVADLDISNGTQILEWYPEFASEDDYVDALMSRELAWLGSDESESW* |
JGI25908J49247_100011237 | F001531 | GAG | MDWSRIERWEYVVTAVASEYSKKFTICEYEDIKQALYQWFAEHPNKLDTWEAIGEKDAKNLIYRSLRNEALDYCQRWKAKTVGYDVSDLYYYEPGLVEVLLPAVLMGNFHIAPKLNLSGGGKPSAPAEGGNIQVMLLEVDSAYWKLSKDDRKLLFFRHAESLDFKEIANFLSLGTEDAARMRHKRAIKRLVNKLGGYRPYHDEDIKDATETEEIPDSQE* |
JGI25908J49247_100011238 | F001515 | N/A | MVKNSSFDLDFGYGRKGETLVEELLTGGRTVEVKRDRKWWITNNLYIEVECWFNKSKAWEPSGLSVTEAAYWAFVLEQSTVIVPTHILKKGVLELGREISCEVPPNKSKGYLITVEDLLTMTRKYKNEKVDNGLE* |
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