NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10002949

Scaffold JGI25908J49247_10002949


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10002949 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5434
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052556Metagenome / Metatranscriptome142N
F063632Metagenome129N
F065720Metagenome / Metatranscriptome127Y
F101045Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_1000294910F052556N/AMIKFELXPEEANGVLQLIDIAIKAGGIANAKVGLPIFDKIMEAAQATQQPQQAELSLEK*
JGI25908J49247_100029493F101045N/AMLSGGVTLNVFTHLQDYTLINSSIENIPEDIKIRIWVRDNFDKTKLRRPCEVFFVPGINLSWIQKMRMCARFARETQEAWFGYAHDDATISREDFSKMLEARKTAGDNIYWIVTNNPKRPEINADIYALFNTKNYWAIGGHDEGFHIYYADIDFHIRQAHNGKSQLGVCTPSTTHIGSNVLKRLEGLEAELYKLQLVKDKDYFKIKHPTVDV*
JGI25908J49247_100029497F065720AGGAMSFLSDLVMKLLRWFYELSQKDLTSQDAQKDDKLKQNLLARIDARERELLVESNLRAERAASALSRIDKSPRVGFRFKRPPSPITKQDNNS*
JGI25908J49247_100029499F063632N/AMKTLIEFLGKFFQNNGHLRGALYFSIAALTPMAAAFVEWASQDGPKNWYEVVALAFGSLISGLTAVRAYLDTHLSNEKNSNE*
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