Basic Information | |
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Taxon OID | 3300003277 Open in IMG/M |
Scaffold ID | JGI25908J49247_10004042 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4693 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F036693 | Metagenome / Metatranscriptome | 169 | Y |
F037719 | Metagenome / Metatranscriptome | 167 | Y |
F039621 | Metagenome / Metatranscriptome | 163 | Y |
F071976 | Metagenome / Metatranscriptome | 121 | Y |
F075702 | Metagenome / Metatranscriptome | 118 | N |
Protein ID | Family | RBS | Sequence |
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JGI25908J49247_1000404210 | F036693 | AGGA | VYNRQMKPRDPIAKDLRTPKYRMRVVESKVQYIRQPKHRKAKDEL* |
JGI25908J49247_1000404213 | F039621 | GAG | MKILFVFIAILVLLVLFPLATIWSLNTLFPALAIPVTLETWMATVILGGVVGGTNGVSFGGKK* |
JGI25908J49247_100040424 | F071976 | AGGA | MKYRVIVNGVSFYTTGAAIKRGVGDSVSVNVVVRQLFENLFNAVGISSTMHVYDHKMNRVSYDVQISKV* |
JGI25908J49247_100040427 | F037719 | N/A | MNDELKALVIKAGAPKEVMNEFWFNIFCQQFANVLLTEAEKEVFGETCE* |
JGI25908J49247_100040429 | F075702 | AGGA | MIQIENLTEYQVEMLDHMWSLDSLEEYEEWYDLLDEEDQQLADSLQQMIILAEMDDLMGDCKDAKDALKKFAL* |
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