NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10007597

Scaffold JGI25908J49247_10007597


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10007597 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3427
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026552Metagenome197N
F036695Metagenome169N
F049433Metagenome146N
F049442Metagenome146N
F076079Metagenome118N

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_100075973F049433N/AMKKFIITEEEKTRILGMHQEYGYNSLNESPSGVGFGPEMNGLKIQKSEQNEQDVEQINDPKIINAVNTVLKKLMMSPKFSTDETLFSLIEQGKLVKAYRLHRDLNTNVDYVDYELLDDMLNNPETKDITRLLPNIKNLLINYFT*
JGI25908J49247_100075974F049442N/AMNKXNLEQGLTKLLKTFFTKKYDRDFSDLTVVLDEYEEDADDVDDEGNWSSAESYYFTVYSNDFDGLPIQKLYNLARELFGNIIGNSNWVDIEFKKYEN*
JGI25908J49247_100075975F026552N/AMELTNVIEKLMNRDSFLNLLENDIIEKFEVNVSPFESKILVIKMFLNITKDEFLGTGESTPRLSEWEVRGXLWEDXNLDPAWWHAYIIPNKILKPLVGXDYFIKILLFVVDKNGIHLFTEN*
JGI25908J49247_100075976F076079N/AMKYLITESQKENIIKKYILSNFDRVDDVWFTNRSVYYGSGPINGKDRGEEIIINVLVNNLDDELTKPNLFELKQSIISKTDKTFNLGYNRYGGGWGFSFSQKTIQKF*
JGI25908J49247_100075977F036695N/AKAILELLNNPKIIPPNDIIHEYTVASHNDVELLVIKVILNIDVNNKGQRGDGERMLYENNFDAYKLSETIVKKILRPLGLLKSISWGVLIVIDASGNRLIEHSMINVVMVKD*
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