NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10020471

Scaffold JGI25908J49247_10020471


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10020471 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1972
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F003690Metagenome / Metatranscriptome473Y
F004431Metagenome / Metatranscriptome438Y
F029434Metagenome / Metatranscriptome188Y
F050376Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_100204712F004431AGGAMTITYSLWDGAQLLGVDFKATSADEMNKAVAELQKVSKNVVAHMRKVEQN*
JGI25908J49247_100204714F003690GGAMSINGFELVISNEYGLEFDSFLGAIYLPWHTIIITALALIAYKIYKIKRGK*
JGI25908J49247_100204716F050376AGAAGGMNLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE*
JGI25908J49247_100204717F000447AGGAGGMGYVEIFRIDDEGAGWVDLSEATPNELLDLEIGLFQEGAI*
JGI25908J49247_100204718F029434AGGMKKYTFGVWLDIDAEDEDMALSLFDSVVKNPFVSDSFCFEWKEVADEIAI*
JGI25908J49247_100204719F001562GAGGMKSQFEIDLEIKESFIDLLNDVYPTIKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMENE*
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