NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10051831

Scaffold JGI25908J49247_10051831


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10051831 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1070
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008688Metagenome / Metatranscriptome329N
F009135Metagenome / Metatranscriptome322Y
F013524Metagenome / Metatranscriptome270Y
F024047Metagenome / Metatranscriptome207N

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_100518311F024047GGAMANVQTKDIIDWVKNAVEKKMIKELNIPNAKVYLSCDRPHPDVILETKNEYGDLQIVRFLVI*
JGI25908J49247_100518312F009135N/AVDFLFLPKKMMSKPKYYLKVXLPATFDDLDAEVXKKDLITYINSXNQYGALYGPKSSXKGIVVEKIIYSTNED*
JGI25908J49247_100518313F013524N/AMKTNKEVVNRLREFTQNNCNTTLDPKLCEDIRYLCDEVDRFGVQMLLMNEYGDEDYITIQKYKSKLEKCQSKLDQYEPF*
JGI25908J49247_100518314F008688N/AMLGSLAAILLTAMTVEPPKIPKIKVYLIMSYRGNDLAIEKVYLKKENAQKYCDMYKDSHNYSVEEKELTE*
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