NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Guam_1004060

Scaffold Guam_1004060


Overview

Basic Information
Taxon OID3300003309 Open in IMG/M
Scaffold IDGuam_1004060 Open in IMG/M
Source Dataset NameGuam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4961
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Unclassified → Unclassified → Cnidaria → Cnidaria Microbial Communities From The Caribbean, With Black Band Disease

Source Dataset Sampling Location
Location NameLuminao reef flat, Guam
CoordinatesLat. (o)13.4644Long. (o)144.6439Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036052Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Guam_10040603F036052N/AMARQEVKRTLKFGFQVYRQFVCEEGFQDFCVGPILIANYILISPQFKK*
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