NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold P22013IDBA_10000294

Scaffold P22013IDBA_10000294


Overview

Basic Information
Taxon OID3300003315 Open in IMG/M
Scaffold IDP22013IDBA_10000294 Open in IMG/M
Source Dataset NameOre pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P2 sample
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Campinas
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33435
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (46.15%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Source Dataset Sampling Location
Location NameMina do Sossego, Brazil
CoordinatesLat. (o)-6.426389Long. (o)-50.051389Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002548Metagenome / Metatranscriptome549Y
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
P22013IDBA_1000029419F092677N/AMRFSTVAATLLLLFAVGCADRGAQPDRQTEWRDVLRHKKAAVAPDARPEHKQAYADSVRAFVEKHPDHGRAREVWQRLQLEFAEDLAALGRHQDSIRFYRAVLAHDPKNQQATRGLASAMESLAVSREKLLALEKGMSHREVASILGRPMPGWSAKNARPEATIEAWYYRTRDGGVAAVYFRDGKVFAAEETSHAKLGRLSS*
P22013IDBA_1000029422F002548GGCGGMPKFEYESQAETGSAFFERRVMRRVRMIVELTLNLISSDRTATHREARCLVECARKAILEIVPGFDERYAHIVQPHFDRVLQQRWPDEELRFSDPRELVN*
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