NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BLZ4_1099832

Scaffold BLZ4_1099832


Overview

Basic Information
Taxon OID3300003317 Open in IMG/M
Scaffold IDBLZ4_1099832 Open in IMG/M
Source Dataset NameBelize BBD 4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)602
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Unclassified → Unclassified → Cnidaria → Cnidaria Microbial Communities From The Caribbean, With Black Band Disease

Source Dataset Sampling Location
Location NameBelize: Carrie Bow Cay Field Station
CoordinatesLat. (o)16.80288Long. (o)-88.08213Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021048Metagenome / Metatranscriptome220Y

Sequences

Protein IDFamilyRBSSequence
BLZ4_10998321F021048N/APIPRVYSMKLISCSLDNSWDNLKREGSATLGDKNKDVALSVDKILPGHYSLERISKEIDNLFAKYNYKLVTAINQPLGQLVIQNPGLKPIELDRDLAGLLGIGRKLLYITFVKRLSSPTTYFIHCDLIDKQKNLFKGKRSDILASFDVKGKPYEKVSYQSSPQQVLRDCSTDQSINSITISVKDENGELFDFKGFPLLFE
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