NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold soilL2_10060114

Scaffold soilL2_10060114


Overview

Basic Information
Taxon OID3300003319 Open in IMG/M
Scaffold IDsoilL2_10060114 Open in IMG/M
Source Dataset NameSugarcane bulk soil Sample L2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9711
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002548Metagenome / Metatranscriptome549Y
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
soilL2_100601144F002548N/AMECPLARPGLRRVTTMPKFEYESQTDVPSAFFERRRLRRVRMIVELTLNLISSDRTVSHREARCLVDCARKAVLELFPGFETRYVHVVQPHFDRVLQQRWPEEELQYTSPTETVN*
soilL2_100601147F092677N/AMRVFPVVSAVVAALAIACGGGQKSAPDHQAEWRDVLRHKDAADSPNATSTHKQVYADSVRAFVQKHPNHGRAAEVWERMQLEFADDLAAVGRNHDAIRFYRAVLEKDAANEHARRGLAVAVDRLAVSRDKLQSLEKGMTEREVAHILGKPLPGWSVRTERSEADYEAWYYRTRAGSVAAVYFRDGKVLAAEEASNAPLAKLGS*
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