NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold rootH2_10316476

Scaffold rootH2_10316476


Overview

Basic Information
Taxon OID3300003320 Open in IMG/M
Scaffold IDrootH2_10316476 Open in IMG/M
Source Dataset NameSugarcane root Sample H2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1082
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101739Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
rootH2_103164761F101739GAGGMRFTKHLWLISVAMVVAAGLSVPAASASGTNALLPSCGAKSYPFKPWGDPDAYCAFPNLGFESGTTAWTVTGKASIASANEPWHVSGPGTHALQLGPGATALSSRLPVNLLDPWMRAFARSVGANGSLRVQVLFRGFTGNLTGVLNVGSLSPGSYSSWQPTQRVLSTLALPLLTTSAQVQFTSTATSGSWQLDDVYLDPCASKLG*
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