NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold soilH1_10081233

Scaffold soilH1_10081233


Overview

Basic Information
Taxon OID3300003321 Open in IMG/M
Scaffold IDsoilH1_10081233 Open in IMG/M
Source Dataset NameSugarcane bulk soil Sample H1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4026
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004160Metagenome / Metatranscriptome450Y
F039330Metagenome / Metatranscriptome164N

Sequences

Protein IDFamilyRBSSequence
soilH1_100812335F039330AGAAGGLRRIAGLVLTLAVCLSTPALAGIALAPQADSLSQLIPLTTWDKQFKITEGKDRGRVVPLTLRRDQDKAGHWYLAFGDYAGVVLANNGRGLMLERLDLFKSHSQVVYNPALPILTPEIAAGTAARVLAAFNMFDAETGRLKRSGQVTHWVKRVSPSRFSTPAGVIDGYFIEIDHRMDMPLAQLQMSLGLGCRLDEGPVFGSGLYTLTKLGIFSETKTSAAALTTVNGTAPSVR*
soilH1_100812336F004160AGGAGMETTDKTARRLALLEGIDLPPADLEAIAAEVADLDRVVAELEAFGRSTPWMSQQTQPAGKKD*
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