Basic Information | |
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Taxon OID | 3300003324 Open in IMG/M |
Scaffold ID | soilH2_10417068 Open in IMG/M |
Source Dataset Name | Sugarcane bulk soil Sample H2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1133 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia |
Source Dataset Sampling Location | ||||||||
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Location Name | Ayr, Queensland Australia | |||||||
Coordinates | Lat. (o) | -19.733298 | Long. (o) | 147.17873 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F060227 | Metagenome / Metatranscriptome | 133 | N |
F083316 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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soilH2_104170681 | F060227 | N/A | RCMRIQQKFVRAIAIVLGMVFLLSGMALAVEPVPLPDIQLTAADGSTVKSNALPSQGNWLIIYIQPRNQFSDNLLRLLKKDQYPTLAQHAVIIVGGSVDDLKTAQTRFPELASATWYADTNKSAFGLMKLTGAPMILGIKQRTITWTLSGILQDVNVAKSILNTWVEG* |
soilH2_104170682 | F083316 | AGG | MKSMGSYFVLTCCALGLLSVNAWSADLSTKTRSQESVRGYLVDTVCVKEEAARLSQLGLRHTKKGLTMPVCRESGYALLLPGNDVLHFDKRGNDLAAKFVNEHRRESGWLLRATGKRTGDQFVVATLELVPRSARKPNK* |
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