Basic Information | |
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Taxon OID | 3300003332 Open in IMG/M |
Scaffold ID | GBSed_10026537 Open in IMG/M |
Source Dataset Name | Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7448 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California |
Source Dataset Sampling Location | ||||||||
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Location Name | Guyams Basin, Gulf of California, Pacific Ocean | |||||||
Coordinates | Lat. (o) | 27.01 | Long. (o) | -111.43 | Alt. (m) | Depth (m) | 2000 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F011723 | Metagenome | 287 | Y |
F016098 | Metagenome | 249 | Y |
F028993 | Metagenome | 189 | N |
Protein ID | Family | RBS | Sequence |
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GBSed_100265371 | F028993 | AGGTGG | MGKIVEKAVKKRRERIAVSEAYYREGVEAPTKDWLEQFKKAKDRRNAGLRRAIEEGLFEKGAERVGTEGWQKATLAKADRWLTGATSEEANEKYESAMADVEECIERAKKAVEGMPTTTIEQRAEKSKRFQIEMAKCMEAKKRGR* |
GBSed_1002653713 | F016098 | GGAG | MSEERKFVYMRKTQSGNGVRMRDGEIVYIASIRSLEAFLQGEREFVAFAKMPYRQIPNEESDRDYVYTWCEKCGGLRFFRKISEDKWKCQTCGMEKTVRELINKLRSIMETE* |
GBSed_100265373 | F011723 | GAG | MIYNKGLRRDNSTNEGKEIFSLTSKEEEKYKVRRIVITDVNTNPLIMEVWLERDRIGENIPLEVASDIAPERVIDLDVEVPIGHTFSIKIKPQTSGNQGSVRGWVEYEIVG* |
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