NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26081J50195_1000343

Scaffold JGI26081J50195_1000343


Overview

Basic Information
Taxon OID3300003346 Open in IMG/M
Scaffold IDJGI26081J50195_1000343 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20388
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (85.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007589Metagenome / Metatranscriptome348Y
F067765Metagenome / Metatranscriptome125N
F074686Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
JGI26081J50195_100034318F007589AGGAMKSFNEFMTEQKKVKWNKVPDGYDGKKKVFKHVTSDGKFEIRLSGMDSMKMNKDGSQKVMPTVFDKSGNTPKHPVIAYSNVDKAKAEVQRWIDDH*
JGI26081J50195_100034322F074686AGGAGMKSDYVVVDTISVFKQRYIIPREEVQRFNEEVKLTDKLAKLWAQESVESEEVKEFSQRWLGETVTNVDFAGTEKVLQFFKEDNEQLSEEWSQAQQLDYINDWKDKTPKR*
JGI26081J50195_10003433F067765AGGAMSTNSKGKLIPFPKIHSNPPIDEVSVGERIREYKESYSSELAEIIWENVLGEMARAGCDFEDNMELYFPSMILIFESIRSLHLQTMNEEHQLQAYAANNVIVDADENAISGGLKKNLEETIDIDEDV*
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