 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003368 Open in IMG/M |
| Scaffold ID | JGI26340J50214_10008550 Open in IMG/M |
| Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3287 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Calvert Island, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012287 | Metagenome / Metatranscriptome | 282 | Y |
| F045228 | Metagenome / Metatranscriptome | 153 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI26340J50214_100085502 | F012287 | N/A | MANFYGLGYLFDLLSTLSTEVSDLRSQEHSDDIWLKEKDLWLDRKRWIDAVQPRIHANQVPQSELLESLTTSAKANQLEIQEQSFGENKSTPNYQSVAVRLKLGGALQNVIKWLVQIQQPELFQAITSFSLKSANEPPTVNLELEVARWYAPNL* |
| JGI26340J50214_100085503 | F045228 | N/A | MAGKIDKSHTHFLRAVDGNEWELWSFSESKKAHFIRRLSTPADVTGETVVALPAERTVTFPAWLATSDRTVIPEILHLQLEKRGLLSKNSGDSAVDYRVIDTRGNQTLAVATILQPEFPRELTFERVSRFEPSAYTFPLPQDRLVIWREKGRLTVAATRGREPVAVQVLSDDELSETAALELKCIALQLQAQHLCDRFLGITLWGEFSVEETERLQKTLALKVTLDAVPPPSLPAMRSKLLPPEVFTLHARKRRRRQIRSGISLLAAVYILGVLGLVGYIYWQRFVADNLRRRIQDQAPTVAAIQGTAERWRHVEWAVNPKLYPVELLFQIASLLPPDGLRLTAVEIQKGNVVIRGEASTAPAAFKFAEDIKAKPELQMFNWRMPSPTLRPDGRAEFTIQGDPKFAKID* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |