NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26337J50220_1001737

Scaffold JGI26337J50220_1001737


Overview

Basic Information
Taxon OID3300003370 Open in IMG/M
Scaffold IDJGI26337J50220_1001737 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2431
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038768Metagenome / Metatranscriptome165N
F055038Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
JGI26337J50220_10017373F055038N/AMLSLLLWPAGLLIELLLLVRSVQTKNLTKYIYFYAYILCVFIVSAGLFIGRSRVEFYEAWYWPTQFATLAMGCAVVLEIVRQALAAYPGAERFARVASCVVFAATFCYVEWHVARRTVWSTSNATIELERDLRVIEALVLATVLAIVFYYRIELGKNVTGMIVGFGAYVGASLTILELRSFVGPRFDPVWPILQTTAYFFALIVWTVALWTYSPNPDPPGGGGGSAGYDALVDGTRARLDSVRSQLGGVAR*
JGI26337J50220_10017374F038768GGTGGMVGLLLYLALGVGLLVFLWVLARRKSAPVEGCGRQFVEARQALRTLQLGLLPENLIERIFDQEDYRYVTATSTDEIGELFLQERSRISLMWVRRVRSEIRNLMHFHLAYSRLHAKLSLLTEIRLALDFALLLMACRALRILLYLRGPYGARSMVRVLTAT
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