NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI26337J50220_1009771

Scaffold JGI26337J50220_1009771


Overview

Basic Information
Taxon OID3300003370 Open in IMG/M
Scaffold IDJGI26337J50220_1009771 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1131
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072556Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
JGI26337J50220_10097711F072556N/AMKSNSQISQNLRALNRTALFWILVLTIWIPRYSAQSNPPSQDQATKPSDEKPWVKSHDSVTVSANLTPEEAEEGRINDVYQSIYPLEQKNDCENAIQRYKLEVIPLAEQSKFEMPKNKFLFLANRGIGNCYLAQRRYEEAEKSFQLIMEYLPVWPGADDSDYPINFRQIATAQIGQQHWEAAEESLKKSVALFDPQIARALDSKVEFSRTEYAGNLLGSQARSRAYLAIVYLRERQTAEALKNADLAYDEATKPNVRPSFLNEIVKIGSTIAQLSGDGVAIAKW
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.